rhizoTrak

Sample data

We supply a data set which is also used for experimental evaluation in the accompanying paper.
It comprises five images from the Jena experiment. For details see the rhizoTrak paper.

The images may be download from this zip-file.

In addition two different variants of a rhizoTrak project are available

1. one rhizoTrak project with the five images imported

   • download and unzip to a directory of your choide
   • open the project rhizoTrak_t23-blank.xml with rhizoTrak
     Note: This will also pop up a window stating TrakEM2 detected a crash, The reason for this is that cached data are not included in the distributed zip file to reduce the amout of data. If you close the project and re-open it this will be corrected.

2. one rhizoTrak project with the five images imported and the complete annotations as used for evaluation

   • download and unzip to a directory of your choide
   • open the project rhizoTrak_t23.xml with rhizoTrak.
     As above, a crash will be reported.
   • annotations were performed without diameter, i.e. root width

In addition the csv files for detailed and aggregated mode are available

• detailed
• aggregated